MidgeBase gene description page [Pn.00236]
Outline
| Gene ID | Pn.00236 |
| Type | Protein coding gene |
| Scaffold | PnScaf322 |
| Start | 1029 |
| End | 3150 |
| Direction | - |
Sequence
Transcript: 1248 (bp)
ATGTTTTGCGAATTTCTTTTATTTTCGAACTTCAGCCCGAAGGTCAACGAGACGCTCATGACGTCGTCGCTGGAGAAGGCGTTCGAGGCGTGGTCGCTGTACAGCCGGCTGGTGTTCAAGCGCGTGTTCGACCCCTCGGCCGACATCATCATCGCCTTCGGCTCGTTCTACCACGGCGACAGCTACCCGTTCGACGGCTCGGGGAATATCCTCGCGCACGCCTTCTACCCGTACGAGGAGAACGCCTTCGGCGGCGACATCCACTTCGACAACGACGAGAACTGGAAGGAGGGCTCCTCGAACCTGAACGAGGGCGTCGACTTCCTCACCGTCGCCTTCCACGAGATCGGCCACAGCCTCGGACTGGCGCACAGTCCCGTCTACAGCGCCATCATGTTCCCCTTCTACAAGGGCGTCACGCCCGCCCAACTCGACTACGACGACATCCTCGGCATGTACCAGCTCTACAGTGAGATTCAGAGCACCATCGAGGACAACACGAGCGGAGAGGACAAGACGGAAGTGCAAACGGAAGAGTCGCCAGTGGCAACGACAGAAAGCGTGCCGGCAGTCGAAGCGAGCGAAGAAGAGCAAGAATCTGAAGAAATATCGTCGGAAAGCGAGGAAATTGACGAGCCAGCAGCGAGGCGCTCCTTCTGCGCGGGCTCATTCGACGCCATGGGCACCATCGACAGCGACCTCGTCGTCATCAAGTCGAACGTCACGTGGAAGTTCAACGCAAATTTCGAGCTGCACGCAGACTTTCCCGCCAAAATCTCCAAGATTTTCCCAAATCTTCCGCTGCGCTTCCGAAAAATCGACGCGCTGGTGCAGTCGAGTGACGGCAACGAGATCAACATTTTTGCCGGCAGCGAGTTCATCACGTACGACATCCGCGGGCCCATCTACACCGCCTACAACCTCACGCGCTACACCAACGACCCGGACATCGCGCGCATCGACGCCGCCATGGTTTGGGCGAAGAACAAGAAGACTTACCTGTTCGCGGACGACCGCTTTTGGCGCTACAGCGACGACCGGCTGATGGACCCGTTCTACCCGCGCATCCTCAAGAGGTGGAAGGGCGTGCCCAAGAACCTCACCGGCGCCATTTCCTTCCCCGCCTCCTCCGGGCCGACCGTGTTCTTCAAGGACGACGAGTATTTGGTGTACGACGACGCCAATGTGCGCCCCAAAGACGGCTACCCCAAGAAGATTCGGGAGCTTTTCCGGTTTTGCGAGGAAATT
Protein: 416 (aa)
MFCEFLLFSNFSPKVNETLMTSSLEKAFEAWSLYSRLVFKRVFDPSADIIIAFGSFYHGDSYPFDGSGNILAHAFYPYEENAFGGDIHFDNDENWKEGSSNLNEGVDFLTVAFHEIGHSLGLAHSPVYSAIMFPFYKGVTPAQLDYDDILGMYQLYSEIQSTIEDNTSGEDKTEVQTEESPVATTESVPAVEASEEEQESEEISSESEEIDEPAARRSFCAGSFDAMGTIDSDLVVIKSNVTWKFNANFELHADFPAKISKIFPNLPLRFRKIDALVQSSDGNEINIFAGSEFITYDIRGPIYTAYNLTRYTNDPDIARIDAAMVWAKNKKTYLFADDRFWRYSDDRLMDPFYPRILKRWKGVPKNLTGAISFPASSGPTVFFKDDEYLVYDDANVRPKDGYPKKIRELFRFCEEI
| Type | Start | End | Length |
| CDS |
1032 |
1300 |
269 |
| CDS |
1495 |
1837 |
343 |
| CDS |
2030 |
2190 |
161 |
| CDS |
2505 |
2954 |
450 |
| CDS |
3126 |
3150 |
25 |
| intron |
1301 |
1494 |
194 |
| intron |
1838 |
2029 |
192 |
| intron |
2191 |
2504 |
314 |
| intron |
2955 |
3125 |
171 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843240 |
matrix metalloproteinase [Culex quinquefasciatus] gb|EDS31299.1| matrix metalloproteinase [Culex quinquefasciatus] |
7e-92 |
| InterPro |
IPR001818 |
Peptidase M10, metallopeptidase |
|
| InterPro |
IPR018487 |
Hemopexin/matrixin, repeat |
|
| InterPro |
IPR024079 |
Metallopeptidase, catalytic domain |
|
| InterPro |
IPR021190 |
Peptidase M10A, matrix metallopeptidase |
|
| InterPro |
IPR000585 |
Hemopexin/matrixin |
|
| InterPro |
IPR006026 |
Peptidase, metallopeptidase |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(CC) |
GO:0031012 |
extracellular matrix |
|
| Gene Ontology(MF) |
GO:0008237 |
metallopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF10462.4 |
Peptidase M66 |
0.075 |
| Pfam |
PF00413.19 |
Matrixin |
3.2e-45 |
| Pfam |
PF11719.3 |
DNA replication and checkpoint protein |
0.049 |
| Pfam |
PF13574.1 |
Metallo-peptidase family M12B Reprolysin-like |
0.058 |
| Pfam |
PF00045.14 |
Hemopexin |
8.8e-20 |
| Pfam |
PF13582.1 |
Metallo-peptidase family M12B Reprolysin-like |
0.0073 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP003929 |
| C. quinquefasciatus |
CPIJ001700 |
| A. aegypti |
AAEL002982 |
| T. castaneum |
TC012853 |
| P. vanderplanki |
Pv.03909 |