MidgeBase gene description page [Pn.00210]
Outline
| Gene ID | Pn.00210 |
| Type | Protein coding gene |
| Scaffold | PnScaf306 |
| Start | 153 |
| End | 1890 |
| Direction | + |
Sequence
Transcript: 1686 (bp)
ATGTCGTGCATCGAGTCGCTCGACTCCTACGACAGCCACTATCTCACGCACAACGCCGCGTCGCTCGGCAACCTCGACAACCCCGGCGCGACCTCGCTGCACTACGCGAGCCTCATGAAGCCCGATACGTCGCAGCAACAGCAACAGCTCGCCGCCTACTACGAGTCGTCGAAGGCGCGCGCGAGCATCTACTCGACGCTCCAGCACGACGTGGACGTGGACGACTACGACGAGCAGGAGCTGTACGAGCAGCTGAAATACAAGAAGCCGGACTACGGCTTCATGACCTCGGAGCGCGAGTTTCTGACCTCGGACCGCATCGACTCGCCGATTACGCGCTACGACGACGACTTCCGGCGCTCGAACTACGAAACCAACCGGAAGTTCTCGATGGACCTCAACGAGGACTTCAACCTGCCCGAGACGAAGGTGTACTCGTCCAGCTACCCGGGCACGACCTACAACACAATGGATCAGCACTTTAAGCGCACGACCTACTCGCAGTACGAGTTCAACGGCTCGCAGGACTTGTCGCACGACAGCTACGAGCTGCTCGAGAAGTCCGACGACGACTTCTACTACAAGTTCAAGAACAACGGGCAGACAGACCACCATGCGGCGCGCTCGTGCTCGCTCGACTCGGGCAACTTCATCCCGACCGACTACGAGAGCGACGAGGAGAAGCACGCGTACCGGTCGGCGTTCGAGACGTCGAAGAGCCGCAGCGCCGCCGACATCCTCAACGACATCTTCCTGCTCGACGATCCGCGCGACCTGCCCAAGGAGAAGCTGTGCGTGAAGTCCGACGGCAGCTTCTACAAGCACGTGAAGCAGGCGATGGGGATGCGGACGTCGAGCCAGGAGTCGCAGAGCGAGTACTACGAGTCGAAGATGTCGAAGAGCAGCGGGAGCAGCAGCAAGAAGTCCAAGGACAGCGTCTATCACACGGACAGCAACAAGAAGAACTCGCGCGAGACGCTCAAGAGCAAGTCGGGCTCGGAGTACAACGCCTCGAGTCCCGAGGAGATTTTCCTGGTCGGCGAGCTGCTCAACCGCGCCAACTACGAGATGCCGACGACGACGGCGAAGAAGACGAAGAGCATCAAGAAGATGCTCGAGAACAGCTCGAAAAACTCGAGCGTGGACTCGCGCAGCGACTTCAAAAGCGCCTCGCAGAGCTTTGACGACGACGGCGACGACTTGCAGAAGATGCTGTCTTTCGACAACTTGGCGCGCGGCGAGAGCGTCGACTCGGCCGGCTTCGACGGGCAGATGCACTTCTCGACGTTCCCGAGCAACAAAACGGGCGGCGGGTCGACGTCGGTGAAGACCTCGCACGTGCAGTCGATTAGCCTGCAGAACGTCGAAATCGAGCGCAACGTCAAGACGTACTCGACCTTCAAGGCTTTTAGCCAGCCGGTGAAGCCGCCCTCGATCGAGAGCTACACGCCCAAAAAGACGCACGTGTGGCCCGAGGAGATCGAGAGCCTCGACTCGACCGGCGAAGCGACGAGCGGCGCGGAGCGCGCGAAAAGCTACCGTAAGCGCTCCGACGGCGAGAACAACATCTTCAGCTTCGACAAGGACAAGATCGAGTCGCTGACGTCGTCGCAGGACAACGACAACATCGTGGCGTTCGACAAGCCGAAGAAGAGCCCCGACTACCCGCTCACGCCGGAGCTCCTA
Protein: 562 (aa)
MSCIESLDSYDSHYLTHNAASLGNLDNPGATSLHYASLMKPDTSQQQQQLAAYYESSKARASIYSTLQHDVDVDDYDEQELYEQLKYKKPDYGFMTSEREFLTSDRIDSPITRYDDDFRRSNYETNRKFSMDLNEDFNLPETKVYSSSYPGTTYNTMDQHFKRTTYSQYEFNGSQDLSHDSYELLEKSDDDFYYKFKNNGQTDHHAARSCSLDSGNFIPTDYESDEEKHAYRSAFETSKSRSAADILNDIFLLDDPRDLPKEKLCVKSDGSFYKHVKQAMGMRTSSQESQSEYYESKMSKSSGSSSKKSKDSVYHTDSNKKNSRETLKSKSGSEYNASSPEEIFLVGELLNRANYEMPTTTAKKTKSIKKMLENSSKNSSVDSRSDFKSASQSFDDDGDDLQKMLSFDNLARGESVDSAGFDGQMHFSTFPSNKTGGGSTSVKTSHVQSISLQNVEIERNVKTYSTFKAFSQPVKPPSIESYTPKKTHVWPEEIESLDSTGEATSGAERAKSYRKRSDGENNIFSFDKDKIESLTSSQDNDNIVAFDKPKKSPDYPLTPELL
| Type | Start | End | Length |
| CDS |
153 |
1837 |
1685 |
| CDS |
1887 |
1887 |
1 |
| intron |
1838 |
1886 |
49 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003435800 |
AGAP001287-PB [Anopheles gambiae str. PEST] gb|EGK97612.1| AGAP001287-PB [Anopheles gambiae str. PEST] |
1e-104 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00218 |
| Pn.06065 |
| Pn.00217 |
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB13815-PA |
| D. melanogaster |
FBgn0051536 |
| P. vanderplanki |
Pv.07647 |
| C. quinquefasciatus |
CPIJ015419 |
| H. sapiens |
ENSP00000362384 |
| A. aegypti |
AAEL001337 |
| C. quinquefasciatus |
CPIJ015421 |
| A. aegypti |
AAEL001353 |
| H. sapiens |
ENSP00000365771 |
| H. melpomene |
HMEL010885-PA |
| D. melanogaster |
FBgn0085335 |
| P. humanus |
PHUM076940-PA |
| S. invicta |
SI2.2.0_14327 |
| H. sapiens |
ENSP00000443876 |
| B. mori |
BGIBMGA003425-TA |
| D. plexippus |
DPOGS202153PA |
| C. quinquefasciatus |
CPIJ015420 |
| M. musculus |
ENSMUSG00000025555 |
| T. castaneum |
TC013717 |
| S. invicta |
SI2.2.0_04344 |
| S. invicta |
SI2.2.0_07056 |
| A. gambiae |
AGAP001287 |
| H. sapiens |
ENSP00000322926 |
| H. sapiens |
ENSP00000264042 |
| P. vanderplanki |
Pv.07648 |
| T. castaneum |
TC013716 |
| M. musculus |
ENSMUSG00000034066 |
| D. plexippus |
DPOGS202151PA |
| D. plexippus |
DPOGS202150PA |
| D. plexippus |
DPOGS202152PA |