MidgeBase gene description page [Pn.00152]
Outline
| Gene ID | Pn.00152 |
| Type | Protein coding gene |
| Scaffold | PnScaf257 |
| Start | 30271 |
| End | 45320 |
| Direction | - |
Sequence
Transcript: 2607 (bp)
ATGGATGATGATCAGCAATTTTGTCTCCGATGGAATAATCATCAGAGCACTCTGATATCGGTATTTGACACTTTATTGGAAAATGGAACGCTCGTCGATTGCACATTGGCGGCTGAGGGAAAATTTTTAAAAGCACATAAAGTCGTCTTATCAGCATGTAGTCCATATTTTGCTACTTTGTTATCACAACAGTATGATAAACATCCAATCTTCATTTTGAAGGATGTCAAATTTCAAGAATTGCGTGCCATGATGGATTACATGTATCGTGGAGAAGTGAATATTTCTCAAGACCAATTGGCAGCTTTACTTAAGGCAGCCGAATCTTTACAAATTAAAGGTCTCTCTGATAGCCGTGGCGGAGGTAACAACAACAATTCCACTAATGCGCCATCTCAAGCACATAAGAGTGATGCAAAATCACACGTACCTGCACCACCAAAGGCTTCAGGCTTAACAATAGAAAACAAAAGACCATTACTGAGAACAGATTTTGATGCGGACATATCTGGCTCCCGAGAAGGCTCAGTCTCACCATCGACCAGAAAACGTAAAAAAGTTAATCAGCGTCGCAAGAGCTTAATCGAAGCAAATAATTTACTAGATAATCATGACCAGCACTCAAATTCCTCATCACATTCTAATAATCAACAACAGTTATCAACCTCCGCTACCTCTGCACCTACAAACAACTTGTCCGTTACCAATACAAAAAAGACTGATCAAGACGGAAATAATCAGGAGCACGATCATGGCGACGATGAGAATGCACAGCCACAGAAGCGTTCGAAGCATGATGACACGGACAATAAGCAGGAATCGGAGTTGATGTTGGAACCGAAAAATGAATATGATGACGATGATGACGAAGGTGATGATAATGTTGAGGATTTGACAATGGACGACGAAATGCTTGAGGATTTGGAAGCTGGACCGAGTCACGGCGGAGAAGGATCTAGTCAAGGATATCATTGGCAAAATCAGGACGGACAGGAATCTGGACAGCACAGAGACGCACAAGATGAATGCGTCAATATACCTCCTCGTTTTCACTGTGAAATGTGTCCATCGAAATTTCGTAGAAAATATCATCTCGTACGTCACTTGAGTTCAAAGCATGGAATTATTGTGCCACCGACACCGCCGAATGTTAAATCAACGACAAATAAAACCGTGAAAAAGGAAGGAAAGCCCGATGCGAAAGACTTGAGCAACTTGTTCATAAACAATTTTGATAAGTTCTCGGTCGAGGCTTTGATGATGAAGCAAGAAAATTTACCGTCAGGATTCGGTGAACAGACAAATGAGTTGAACGATGTGTCGATTGCGCATCTCGGCCTGCAACAAACTGCGCTGAGTGATGATGTGTCAATGGCACATTTGGGACTTCAACAAACCTTCCAAAATCTCAAAAATCTGTTCGTCAATTACACACTTAACAATATATCCTGCAACAAATCATATCGCTTTAAATTGAAGGAACAAACTAAAACTCAACAACCGCAAACGACACATGATATGAACGATTGCCTTCTCGAAAGTGAAAACTTCCAAATTACTAAAGCGGACAACAATAAGTACCTCTTGCTGCCCGTTAAGAAGCCACCCGCCGAGAAGATTGTTCTGAAGGAATGCGAACTCGTTCCTGTAAAGCGTCCTCAAGTGAAGGTGACATCAACAAAGTTCGAAAAATCTGCAAACATTTCAATCGTTCAAAAAGTGCCAGAAACGCCTCAGCCGCAATCACAAATTTCGACAACAACTACTACAACGGTGGCAGCCGTCGCCTCCACCGCGGCACCAACACCTGCAGCTGTTCCAGCACTCGCTGCTATCGATGGCGAGAAGAAAGTTGTAAAGACAAATCACCCGCGCATTAAATATTCTCGCCATAAAAATCCTACAATCCTCGCGAGCTACAGTCAAACGCCAGCTATTCCTCAGCCGGTAATTCAACAGCAGGCGACCGTTCAGCCAATTCGCACGCAAGTGCTCTCCGATGGCAAAAAAATTGAGTACATCAGTGTAACAACGGTGAAGCCGGCTGAGTCAATTGCGAAGCCAATCATTGTTCCTGTGACCAACAACACTCATCAGTTCGTAATTCAAGCAGTACCGACAAGTGCAAATCAACAGGTGACCGAATACGAGGTGTCGGCTGCACCGGCCAATACAAGCAGCCAGAGCAGCGACTTCCCAAATGAGATTATGGATGACTTGGAATATGGCATTGACGACATTGAATTGCCCGAGGATGTTCAAATACACTTTAGCGACTCGTACAAGGACGAGAGTGACACTCGCGAAACAGTTGGCAACTCAATCAAGAAATATTATGCAACAGTGAGCGACAATTCGATTGCCAGTGATACTGAGGAATCTGGACGTCAGTACGAATGCCGCCATTGTGGCAAAAAATACCGCTGGAAGTCAACACTACGTCGTCACGAGAATGTTGAATGTGGTGGAAAGGAAGCCAGTCATCAATGTCCATATTGTAGCTACAAAGCAAAGCAGCGTGGCAACTTGGGCGTTCACATACGCAAACATCATGCCGATAAGCCGCCGCTAGAGACGCGCCGAACCAAGAAAACACTCAACACACGC
Protein: 869 (aa)
MDDDQQFCLRWNNHQSTLISVFDTLLENGTLVDCTLAAEGKFLKAHKVVLSACSPYFATLLSQQYDKHPIFILKDVKFQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDSRGGGNNNNSTNAPSQAHKSDAKSHVPAPPKASGLTIENKRPLLRTDFDADISGSREGSVSPSTRKRKKVNQRRKSLIEANNLLDNHDQHSNSSSHSNNQQQLSTSATSAPTNNLSVTNTKKTDQDGNNQEHDHGDDENAQPQKRSKHDDTDNKQESELMLEPKNEYDDDDDEGDDNVEDLTMDDEMLEDLEAGPSHGGEGSSQGYHWQNQDGQESGQHRDAQDECVNIPPRFHCEMCPSKFRRKYHLVRHLSSKHGIIVPPTPPNVKSTTNKTVKKEGKPDAKDLSNLFINNFDKFSVEALMMKQENLPSGFGEQTNELNDVSIAHLGLQQTALSDDVSMAHLGLQQTFQNLKNLFVNYTLNNISCNKSYRFKLKEQTKTQQPQTTHDMNDCLLESENFQITKADNNKYLLLPVKKPPAEKIVLKECELVPVKRPQVKVTSTKFEKSANISIVQKVPETPQPQSQISTTTTTTVAAVASTAAPTPAAVPALAAIDGEKKVVKTNHPRIKYSRHKNPTILASYSQTPAIPQPVIQQQATVQPIRTQVLSDGKKIEYISVTTVKPAESIAKPIIVPVTNNTHQFVIQAVPTSANQQVTEYEVSAAPANTSSQSSDFPNEIMDDLEYGIDDIELPEDVQIHFSDSYKDESDTRETVGNSIKKYYATVSDNSIASDTEESGRQYECRHCGKKYRWKSTLRRHENVECGGKEASHQCPYCSYKAKQRGNLGVHIRKHHADKPPLETRRTKKTLNTR
| Type | Start | End | Length |
| CDS |
30274 |
30417 |
144 |
| CDS |
30525 |
31351 |
827 |
| CDS |
32103 |
32288 |
186 |
| CDS |
36867 |
36873 |
7 |
| CDS |
38153 |
38574 |
422 |
| CDS |
43950 |
44006 |
57 |
| CDS |
44089 |
44448 |
360 |
| CDS |
44537 |
44696 |
160 |
| CDS |
44765 |
45034 |
270 |
| CDS |
45147 |
45320 |
174 |
| intron |
30418 |
30524 |
107 |
| intron |
31352 |
32102 |
751 |
| intron |
32289 |
36866 |
4578 |
| intron |
36874 |
38152 |
1279 |
| intron |
38575 |
43949 |
5375 |
| intron |
44007 |
44088 |
82 |
| intron |
44449 |
44536 |
88 |
| intron |
44697 |
44764 |
68 |
| intron |
45035 |
45146 |
112 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865543 |
lola [Culex quinquefasciatus] gb|EDS41871.1| lola [Culex quinquefasciatus] |
4e-84 |
| InterPro |
IPR015880 |
Zinc finger, C2H2-like |
|
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| InterPro |
IPR013087 |
Zinc finger C2H2-type/integrase DNA-binding domain |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF04272.9 |
Phospholamban |
0.21 |
| Pfam |
PF13894.1 |
C2H2-type zinc finger |
8.4e-07 |
| Pfam |
PF13909.1 |
C2H2-type zinc-finger domain |
0.0059 |
| Pfam |
PF12756.2 |
C2H2 type zinc-finger (2 copies) |
0.036 |
| Pfam |
PF00096.21 |
Zinc finger, C2H2 type |
2.9e-06 |
| Pfam |
PF13465.1 |
Zinc-finger double domain |
0.017 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
5.1e-26 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM449150-PA |
| A. mellifera |
GB12094-PA |
| P. vanderplanki |
Pv.06109 |
| C. quinquefasciatus |
CPIJ015575 |
| S. invicta |
SI2.2.0_01707 |
| A. gambiae |
AGAP005245 |
| T. castaneum |
TC003097 |
| A. aegypti |
AAEL009212 |