MidgeBase gene description page [Pn.00108]
Outline
| Gene ID | Pn.00108 |
| Type | Protein coding gene |
| Scaffold | PnScaf203 |
| Start | 22595 |
| End | 24043 |
| Direction | + |
Sequence
Transcript: 1383 (bp)
ATGTCAAAATATCAAGATAAGTTTAGACTCGTGCCAGACGTCGATGTCCGATCGAAAAATTCCCGCAAGCTGCCGAGAAGAAAACTGAAGATCTTAATTTTAATCGCCTTCATGACAGTTGTCATTGTGCTCTTCTACACATCGACAAAACGAAGCGTTTCGTTTAGCGAGCAGAGTTTAAGCATTTTCGATGACTCACAGGTGCAGAAGAGCGGCGACGATAAAGAAATCAATTACCCAGATTATGGCTTGGAAATTGTCGAGCACCAAGAGGACGCCGAGAAAAAAGAAGAAAACGAAGAAAATGAGGAGGAGGAGCTGGAGGAGAGTGTGAATGAGAGCAATTCGACTAAGTACGTGCTTTTCTGGACGAAGTTTTTCAATAATCCCGATTGGTACACGGGCAAAGAAGACGCTGGCAAAGAGGTGCTGGAATCCGTTCAATGTCCCGTCACAAATTGCTTTTTCACGCACAATAAGGATTTGCTTGAGAGAGATATCACAAAATTTGATGCGATTGCCTTTCATGGACCGGAATTCAGATCGAAGCCATTGCCCACGGTAAGAAGTCCGCGCCAACTTTACATTTTCGTCTCGCTGGAGTCACCAACCGCCGTTTTAGACGACTTGAATCGGTACAAGGACTTTTATAATCTCACCATGACTTATCGCCTCGACTCAGACATCGAGTTCGACTATGGAAAGGTCATTAAAATTGGCACCGATGAGATCGTTGCACCCTCGAAGAATCCGCAATGGCTGAAAGTTGATGAGGATTTTTATGATGGGAAAATGATCGAAATTTTCGACAAAAAAACGAAGAACGTCGCTTGGTTTGTGTCTAATTGCTTCACGCGATCGAATAGAAACAATTTGGTGAAGAAGATGCAAGAGTTTACCGACGTGGACATTTACGGAAAATGCGGCCCACTCAAATGCAAAGTCGATGCACAAGAGTGCCTCGACATGCTTTCATCGGACTACAAGTTCTACTTGTCTTTCGAAAATTCTCTCTGCAAAGATTACGTAACGGAAAAGATTTATCGACCGCTCACGCAGCACGTCATTCCGATTGTCTTTAACGGCGGCAACACGACTCGCTTTGCTCCACCCAAGTCGTACATAAACGCAAACGACTTCGATACCGCAGAAGATCTCGTCAAGTACTTGCAGACCTTGGCCGACAATCCAAGGGAGTACATCAAGTACTTCTGGTGGAAGAAGCACTACTACATCAAGTCACACCCGACCTTCCCCTACACGCTCTGTGACCTTTGCACGAAGCTCCACAGCAAGCAGTTTATGCAAGCAACTCATCGCTATGCCGACATCAACTCCTGGTACAAGGACGACATGTGCGATCAGCGAGCTCACATAAAGTTT
Protein: 461 (aa)
MSKYQDKFRLVPDVDVRSKNSRKLPRRKLKILILIAFMTVVIVLFYTSTKRSVSFSEQSLSIFDDSQVQKSGDDKEINYPDYGLEIVEHQEDAEKKEENEENEEEELEESVNESNSTKYVLFWTKFFNNPDWYTGKEDAGKEVLESVQCPVTNCFFTHNKDLLERDITKFDAIAFHGPEFRSKPLPTVRSPRQLYIFVSLESPTAVLDDLNRYKDFYNLTMTYRLDSDIEFDYGKVIKIGTDEIVAPSKNPQWLKVDEDFYDGKMIEIFDKKTKNVAWFVSNCFTRSNRNNLVKKMQEFTDVDIYGKCGPLKCKVDAQECLDMLSSDYKFYLSFENSLCKDYVTEKIYRPLTQHVIPIVFNGGNTTRFAPPKSYINANDFDTAEDLVKYLQTLADNPREYIKYFWWKKHYYIKSHPTFPYTLCDLCTKLHSKQFMQATHRYADINSWYKDDMCDQRAHIKF
| Type | Start | End | Length |
| CDS |
22595 |
23378 |
784 |
| CDS |
23442 |
24040 |
599 |
| intron |
23379 |
23441 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660128 |
alpha(1,3)fucosyltransferase [Aedes aegypti] gb|EAT48746.1| alpha(1,3)fucosyltransferase [Aedes aegypti] |
2e-84 |
| InterPro |
IPR001503 |
Glycosyl transferase, family 10 |
|
| Gene Ontology(BP) |
GO:0006486 |
protein glycosylation |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0008417 |
fucosyltransferase activity |
|
| Pfam |
PF12698.2 |
ABC-2 family transporter protein |
0.35 |
| Pfam |
PF07423.6 |
Protein of unknown function (DUF1510) |
0.0059 |
| Pfam |
PF00852.14 |
Glycosyltransferase family 10 (fucosyltransferase) |
1.7e-86 |
| Pfam |
PF03348.10 |
Serine incorporator (Serinc) |
0.012 |
| Pfam |
PF00291.20 |
Pyridoxal-phosphate dependent enzyme |
0.24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC008652 |
| A. gambiae |
AGAP000365 |
| M. musculus |
ENSMUSG00000036587 |
| H. sapiens |
ENSP00000302599 |
| C. quinquefasciatus |
CPIJ006298 |
| A. aegypti |
AAEL000244 |
| T. castaneum |
TC008651 |
| A. mellifera |
GB17182-PA |
| H. melpomene |
HMEL010690-PA |
| D. melanogaster |
FBgn0044872 |
| D. plexippus |
DPOGS205741PA |
| D. plexippus |
DPOGS205388PA |
| M. musculus |
ENSMUSG00000055373 |
| D. plexippus |
DPOGS205387PA |
| D. plexippus |
DPOGS213757PA |
| S. invicta |
SI2.2.0_03929 |
| C. quinquefasciatus |
CPIJ006301 |
| D. plexippus |
DPOGS205740PA |
| P. vanderplanki |
Pv.17419 |
| N. vitripennis |
NV13645-PA |
| H. sapiens |
ENSP00000318142 |
| H. melpomene |
HMEL010466-PA |
| P. vanderplanki |
Pv.15470 |
| B. mori |
BGIBMGA009243-TA |
| H. melpomene |
HMEL017887-PA |
| P. vanderplanki |
Pv.11627 |