MidgeBase gene description page [Pn.00093]
Outline
| Gene ID | Pn.00093 |
| Type | Protein coding gene |
| Scaffold | PnScaf179 |
| Start | 56700 |
| End | 57179 |
| Direction | - |
Sequence
Transcript: 291 (bp)
ATGCTCTTCTACTCGTTTTTCAAATCACTAGTCGGAAAGGATGTCATTGTGGAGCTCAAAAACGATTTATGTATATCTGGAACGCTACACAGTGTCGATCAGTACCTCAACATAAAGCTAACAGACATCAGCGTCACAGATCCTGAGAAATATCCGCATATGCTCAGCGTAAAGAACTGCTTCATTCGCGGTTCGGTGGTGCGGTATGTCCAACTGCCGGCAGACGAGATTGACACACAGATTCTGCAAGACGCTTCGAGGAAGGAGAGCACCACCAGTTCCAGTGCACGA
Protein: 97 (aa)
MLFYSFFKSLVGKDVIVELKNDLCISGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEIDTQILQDASRKESTTSSSAR
| Type | Start | End | Length |
| CDS |
56703 |
56790 |
88 |
| CDS |
56850 |
56981 |
132 |
| CDS |
57046 |
57113 |
68 |
| CDS |
57177 |
57179 |
3 |
| intron |
56791 |
56849 |
59 |
| intron |
56982 |
57045 |
64 |
| intron |
57114 |
57176 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_571571 |
U6 snRNA-associated Sm-like protein LSm2 [Danio rerio] gb|AAH85441.1| Smx5 [Danio rerio] gb|AAI52151.1| Smx5 [Danio rerio] gb|AAI64435.1| Smx5 protein [Danio rerio] |
1e-43 |
| InterPro |
IPR001163 |
Ribonucleoprotein LSM domain |
|
| InterPro |
IPR016654 |
U6 snRNA-associated Sm-like protein LSm2 |
|
| InterPro |
IPR010920 |
Like-Sm (LSM) domain |
|
| InterPro |
IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
|
| Pfam |
PF01423.17 |
LSM domain |
9.1e-15 |
| Pfam |
PF14438.1 |
SM domain found in Ataxin-2 |
7.8e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000364813 |
| N. vitripennis |
NV14616-PA |
| T. castaneum |
TC000255 |
| D. melanogaster |
FBgn0036277 |
| H. melpomene |
HMEL003738-PA |
| H. sapiens |
ENSP00000414634 |
| H. sapiens |
ENSP00000403345 |
| D. plexippus |
DPOGS204929PA |
| H. sapiens |
ENSP00000414006 |
| H. sapiens |
ENSP00000406280 |
| A. aegypti |
AAEL001363 |
| H. sapiens |
ENSP00000372883 |
| P. vanderplanki |
Pv.16876 |
| A. gambiae |
AGAP005136 |
| A. mellifera |
GB13993-PA |