MidgeBase gene description page [Pn.00058]
Outline
| Gene ID | Pn.00058 |
| Type | Protein coding gene |
| Scaffold | PnScaf123 |
| Start | 184 |
| End | 1976 |
| Direction | - |
Sequence
Transcript: 1503 (bp)
ATGAAGTTCAACAGACTGGTTTTCGCCGCTTCGCTTTGCGCTCTCGTCCTCGCGCAGGAGCCGCCCATCGACTGCGTCTACAACACGGCCACGATCAGCGGCGTCGAGCACTACGTGTGCAACCTCGAGATCGAGAACCCCGACGGCTTCGACGGCTTCTCCGCGATCCCGGGCGAGCACGAGGCGGGCAGGGGCGACGGCGACGTGACCTTCATCACCAACTACCACGGCTCGACCAGTGTGCTGCCGCGCGTCATCTGCGCGCAGTTCCCGAACTTGCAGGTCATGAACTTCATTCAGTTCGGCCTCGAGACAGTCACGGAGGCGTCGCTGAGCGGATGCCGTGACCTTCGCACCTTTGAGGTCTTCAACAACCGAATCGCGTCGCTGCCCGCCGGCACCTTCGTCAACAATGGAAACCTCACATTCATCGACGTCGGCGAGAACCGGCTGGAGTCGCTGCCCGAGTCGATCTTTGCGAGCCAGAGCAAGCTCATTGCGCTCGAGCTGAAGAACAACCCGTTCGTCGAGAACTTCGCGCCCGGCACGTTCGACAGCCTCGTGAACCTGCGCATGCTGCTCATCGACCACTGCCAGCTGACCGCCATCGACCCGGCCTGGTTCGCGAACCTCCGCAGCCTCGTCACGCTCAACATCTACAGCAACTTCATCACGCAGCTGCCCGCGCGCGCCTTCAGCGGCCTCGCCGACCTCAACATCGTCAACCTCAACGAGAACTTCATCCAGGAGGTCCACGAGCAGGCCTTCGAGGGTCTGCGCCGGCTGCAGTACGTCCTGCTCGAGAACAACAAAATCGCCAACCTGCCGCGCTTCGTCTTCGCGCCCTTCGACGCCATCGCGTACGTCGACCTGCGCGGCAACCGCATCAAGACGCTGCGCCGCGAAAGCTTCGGCGCGCTCGCCGCCCTCGGCACCCTCAACCTCGACCTCAACGTCGTCAATGCGCTCGACGAGGCGATCCTCGAAGAGGCGACCAGTCTTTACTGGCTCTACTTCGGCAGCAACCTCTGCGCCAGCGGCCTCTTCAGCAACTTCAATGCCAACCGGGCCGCCTTCATGCCGCGCCTGTCGCGGTGCTTCCGCAACTTTGAGTTCACCGTCGGTGAGTGCGAGCAAACCTCGACGGACGTCGACCTCGACTACCAGTTCCACGCCGCTCCCGAGCCAGGCATTCAACTCCGCGTTCTCTCGCAAGATGTCGTCCACATCGCCCTCACGCCCTTCAACTTCCCGTGGACGCCGATGCTGGAGATCTTCATCGGAACGGCCAACAACACGCGGTCGGTGATCCGCAGGAATCAGGAGACGGACGTCGTTGTGGTGCCGACGCCGGGAATCTTGGTTGACGGCATCTGGAACGGCTTCCGAGTGACTTGGGCGAACCACATCCTCCTTGTGACGCGAGAGGGCGACTCGTTCCCGTTTCTGGCCTTCACCATGCAGGACTTCTTCAATGTGAACTTTTATGGCCTGCGAACGCCG
Protein: 501 (aa)
MKFNRLVFAASLCALVLAQEPPIDCVYNTATISGVEHYVCNLEIENPDGFDGFSAIPGEHEAGRGDGDVTFITNYHGSTSVLPRVICAQFPNLQVMNFIQFGLETVTEASLSGCRDLRTFEVFNNRIASLPAGTFVNNGNLTFIDVGENRLESLPESIFASQSKLIALELKNNPFVENFAPGTFDSLVNLRMLLIDHCQLTAIDPAWFANLRSLVTLNIYSNFITQLPARAFSGLADLNIVNLNENFIQEVHEQAFEGLRRLQYVLLENNKIANLPRFVFAPFDAIAYVDLRGNRIKTLRRESFGALAALGTLNLDLNVVNALDEAILEEATSLYWLYFGSNLCASGLFSNFNANRAAFMPRLSRCFRNFEFTVGECEQTSTDVDLDYQFHAAPEPGIQLRVLSQDVVHIALTPFNFPWTPMLEIFIGTANNTRSVIRRNQETDVVVVPTPGILVDGIWNGFRVTWANHILLVTREGDSFPFLAFTMQDFFNVNFYGLRTP
| Type | Start | End | Length |
| CDS |
187 |
554 |
368 |
| CDS |
735 |
1413 |
679 |
| CDS |
1521 |
1976 |
456 |
| intron |
555 |
734 |
180 |
| intron |
1414 |
1520 |
107 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW42624 |
hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864] |
2e-27 |
| InterPro |
IPR022041 |
Farnesoic acid O-methyl transferase |
|
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
4.6e-39 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
7.8e-28 |
| Pfam |
PF12248.3 |
Farnesoic acid 0-methyl transferase |
1.1e-15 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
0.00024 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
1.8e-14 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
6.8e-16 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
1.6 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06953 |