MidgeBase gene description page [Pn.00049]
Outline
| Gene ID | Pn.00049 |
| Type | Protein coding gene |
| Scaffold | PnScaf121 |
| Start | 22463 |
| End | 27640 |
| Direction | + |
Sequence
Transcript: 1107 (bp)
ATGAATCAAGTGGTAAATTGTTCCAACAATTTTGGAAATAATAATCAGACATTCGAATTGAACTTTAACGTAAGCACTGCAAATAGCAGTGGCGACACAAATACTACCGAATTATTATTCAGTGATAGCTCGTCGTTTGACGATGCAATACAGTGCTTGTTGAACTTTAACGGCAGCTCTATTGAGACTGCGAATCGCCTAGTACAGCAGTTATACGATTGGAATTTGTCTACAGTAAACACCACAAGTGATGGCATCTTTTTTGAGACAGATCAGGAGCCTCACTATGATTGGACTTTTCTCTTTGCCATTTTCTTCATCATCGCCGGCGGTCTTGGAAATATTCTTGTTTGCTTGGCGGTAGCACTAGATAAAAAGCTTCAGAACGTAACAAACTATTTTCTTCTATCACTGGCCGTTGCCGATTTATTGGTCAGTCTTTTTGTGATGCCATTGGGAGCAGTTCCTGCATTTTTAGGGTTTTGGCCTTTAGGATTTACGTGGTGTAACATTTATGTGACATGTGATGTACTGGCGTGCTCTGCAAGCATTTTACACATGTGTTTCATTAGTTTAGGCAGATATTTAGGCATAAGGAATCCACTCGGATCTCGACAGAGCTCAACAAAACGACTGACAGGCTTTAAAATTGCTCTCGTATGGCTACTGGCAATGCTAATTTCTTCTTCAATTACGGTACTGGGTATCGTTGACGAGCACAATATAATGCCGAAACCAAAGCAGTGTGTTATCAACAATCGAACATTCTTTATATTTGGATCTTTATTTGCATTTTATGTGCCAATGGTTCTTATGGTTTTGGGACTCGTCTTTTTTACTTTCGTACTGTGTTGGAGTCCTTTTTTCATCCTCAACATTCTGTTCGCAACGTGCCCTACATGTGAAGTACCTGACCATATCATCAATATTTGTTTGTGGTTGGGATATGTGTCATCCACTATAAATCCAATTATTTATACAATTTTCAACAAAACTTTTCGAGCGGCATTCATACGTCTACTAAAGTATCCGGTCGACCGTCTCGATATCGAAGCGTTACAGATGCAAGAGGGACTATTAGCTTATGCGTTCCATCAGCCTTACCGC
Protein: 369 (aa)
MNQVVNCSNNFGNNNQTFELNFNVSTANSSGDTNTTELLFSDSSSFDDAIQCLLNFNGSSIETANRLVQQLYDWNLSTVNTTSDGIFFETDQEPHYDWTFLFAIFFIIAGGLGNILVCLAVALDKKLQNVTNYFLLSLAVADLLVSLFVMPLGAVPAFLGFWPLGFTWCNIYVTCDVLACSASILHMCFISLGRYLGIRNPLGSRQSSTKRLTGFKIALVWLLAMLISSSITVLGIVDEHNIMPKPKQCVINNRTFFIFGSLFAFYVPMVLMVLGLVFFTFVLCWSPFFILNILFATCPTCEVPDHIINICLWLGYVSSTINPIIYTIFNKTFRAAFIRLLKYPVDRLDIEALQMQEGLLAYAFHQPYR
| Type | Start | End | Length |
| CDS |
22463 |
22940 |
478 |
| CDS |
24834 |
25058 |
225 |
| CDS |
25135 |
25247 |
113 |
| CDS |
27092 |
27202 |
111 |
| CDS |
27332 |
27431 |
100 |
| CDS |
27558 |
27637 |
80 |
| intron |
22941 |
24833 |
1893 |
| intron |
25059 |
25134 |
76 |
| intron |
25248 |
27091 |
1844 |
| intron |
27203 |
27331 |
129 |
| intron |
27432 |
27557 |
126 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863274 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS38344.1| conserved hypothetical protein [Culex quinquefasciatus] |
2e-89 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF07470.8 |
Glycosyl Hydrolase Family 88 |
0.12 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
1.1e-53 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000041380 |
| H. sapiens |
ENSP00000276198 |
| P. vanderplanki |
Pv.01451 |
| C. quinquefasciatus |
CPIJ011883 |
| H. sapiens |
ENSP00000258400 |
| D. plexippus |
DPOGS208755PA |
| P. humanus |
PHUM220540-PA |
| A. mellifera |
GB18151-PA |
| T. castaneum |
TC013979 |
| A. gambiae |
AGAP002232 |
| M. musculus |
ENSMUSG00000026228 |
| A. aegypti |
AAEL017162 |
| T. castaneum |
TC013980-GA |
| H. sapiens |
ENSP00000361019 |
| S. invicta |
SI2.2.0_03194 |
| D. melanogaster |
FBgn0087012 |
| H. melpomene |
HMEL002258-PA |