MidgeBase gene description page [Pn.00047]
Outline
| Gene ID | Pn.00047 |
| Type | Protein coding gene |
| Scaffold | PnScaf121 |
| Start | 980 |
| End | 1728 |
| Direction | + |
Sequence
Transcript: 669 (bp)
ATGTACACGATCTCAATCTTGGAGCGCATCAAGCTAAACTACTCGATGTGCAGCATCGGAACGATTGTGGTTTATACGTTTTTCGTTCAATTTGTACCGCAAATTCTATGGCTTACAGTTCTTTTCTTCATTCTGGCCGAGTGCTTTAAGCTATCAATAATTCAAAAATTATACTCTCTCGACACAAGCAACAATGTCGAGAATAATGCGAGAAAACGACGCGGCAATAAAGTCGTTGAAAGCGCAAAGTTTGGACTCCTAATGATCCTTACTGTCTTCTTCTTTGGCTTCATCTGTATCATTCTGGGCGCGCCCGCATTAGAGAATTATGAGAAGACATTGACGCTCTCGTCATTGCTCACCAGCCTCACGCTCTTCCCCATCTCATTAATTGTAGGTGTGAGCGGAACTATCTCCATCCTACTCACCGACTCGTTCGAGCTCGTCAACGTAACTAGTCAAGCATTCTTGAGGCTGCTCAAACGCAACGCCTATCTAGTCATATTCGGCGCTTTCATCGGCAGTGTCGTCTTTCCCCTCGACTGGGATCGTCCATGGCAAATCTACCCGATCCCGAACATTGTAGGAGCCATCACTGGACAAATGCTCGGCTCCTTCTATACGCTGTTCGAGACAATGGTCAAGCACAAGCTCGGCAAGAAACAGCAT
Protein: 223 (aa)
MYTISILERIKLNYSMCSIGTIVVYTFFVQFVPQILWLTVLFFILAECFKLSIIQKLYSLDTSNNVENNARKRRGNKVVESAKFGLLMILTVFFFGFICIILGAPALENYEKTLTLSSLLTSLTLFPISLIVGVSGTISILLTDSFELVNVTSQAFLRLLKRNAYLVIFGAFIGSVVFPLDWDRPWQIYPIPNIVGAITGQMLGSFYTLFETMVKHKLGKKQH
| Type | Start | End | Length |
| CDS |
980 |
1289 |
310 |
| CDS |
1367 |
1725 |
359 |
| intron |
1290 |
1366 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650626 |
hypothetical protein AaeL_AAEL015107 [Aedes aegypti] gb|EAT32673.1| conserved hypothetical protein [Aedes aegypti] |
3e-31 |
| InterPro |
IPR009580 |
GPI biosynthesis protein Pig-F |
|
| Gene Ontology(BP) |
GO:0006506 |
GPI anchor biosynthetic process |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(CC) |
GO:0005789 |
endoplasmic reticulum membrane |
|
| Pfam |
PF04647.10 |
Accessory gene regulator B |
0.00076 |
| Pfam |
PF12420.3 |
Protein of unknown function |
0.49 |
| Pfam |
PF06699.6 |
GPI biosynthesis protein family Pig-F |
4.9e-31 |
| Pfam |
PF02417.10 |
Chromate transporter |
0.56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB15368-PA |
| C. quinquefasciatus |
CPIJ011253 |
| A. gambiae |
AGAP012934 |
| P. vanderplanki |
Pv.01450 |
| D. plexippus |
DPOGS209848PA |
| H. sapiens |
ENSP00000281382 |
| M. musculus |
ENSMUSG00000024145 |
| T. castaneum |
TC009427 |
| C. quinquefasciatus |
CPIJ019240 |
| P. humanus |
PHUM479220-PA |
| B. mori |
BGIBMGA008074-TA |
| H. melpomene |
HMEL012163-PA |
| A. aegypti |
AAEL011190 |
| A. aegypti |
AAEL015107 |
| D. melanogaster |
FBgn0036893 |
| A. gambiae |
AGAP004816 |