MidgeBase gene description page [Pn.00038]
Outline
| Gene ID | Pn.00038 |
| Type | Protein coding gene |
| Scaffold | PnScaf78 |
| Start | 7885 |
| End | 9056 |
| Direction | - |
Sequence
Transcript: 1017 (bp)
ATGAAGCTTCTCTTGATTGCAGCGATCGCTTTCGTTGCCCTTTCAGCTGTCACCGCAGCAAAGTACACGCAAGAGGAAGAGGAGCGAATTTTCAACCACTGGCTTAAGAAGCACGGCATCAAAGTTCCCCACGACGAGGCCGGCAAGAAGTGGAAGGCGAACGTCATCAAAAATCTCGAGGACATCGAGGCGCACAACGAACGCTACCGAAAAGGCGAGGAGTCCTTCGAGCGCTCGCTCAACCACCTCGCGCACTTGGATGACGACGAAATCACTCAAAACCGTCTCGGCCACGAGGACTACACGCCCGACCAGAAATCGGTCGTTCCGGTCATTACTCGCAGTCGTCGCGCCGCAGACAATCTACCAGCTTACTGGAACTGGGCCGACAAGGGAATCGTCCAGCCGGTCCAGCAGCAGGGCCACTGTGGCTGCTGCTACGCCTTCGCCGCAACGGCCGCCATTGAGGCTCATGCCTGCAAGCACTTCAGCCAGTGCACGAAGCTCTCGGAGCAGGAGAGCATGGAGTGTACGAGGGGCTGCAAGGGCGGCCACGCTCAGCTCGTCTACGACTACTCGAACGACAAGGGCGGCCTCGCTAAGGAGAAGGACTACGCTTTTGAGGCAAAAACGATTAACGAGTGCGAGGCTGACGTGAAGAACAACCCGCGAGTGGCCAACACGAAGGTCTTCAACTGGAGGTACATGCCGAATGACACCTACACCATCATGCACCATTTGTACAACAAGGGACCGATGTACGTGGGCGTGCAGATGTACAAGAATTTCCATCACTACTCGAGCGGCGTCTTTGACAATCCGAAAGATAAAACTGGCGGCCACGCGATTCTCCTCGTCGGCTATGGCACAGAGAAGGGCAAGGACTACTGGATCATCAAGAACTCGTGGGGTGAACGCTGGGGCGAGAATGGCTATGCGAAAATCCGACGTGGTGTCGATCTGATGACCATCGAATCGAGAACAGTCTCTTATCCGATCTTGGATCCAAAAGAAAAG
Protein: 339 (aa)
MKLLLIAAIAFVALSAVTAAKYTQEEEERIFNHWLKKHGIKVPHDEAGKKWKANVIKNLEDIEAHNERYRKGEESFERSLNHLAHLDDDEITQNRLGHEDYTPDQKSVVPVITRSRRAADNLPAYWNWADKGIVQPVQQQGHCGCCYAFAATAAIEAHACKHFSQCTKLSEQESMECTRGCKGGHAQLVYDYSNDKGGLAKEKDYAFEAKTINECEADVKNNPRVANTKVFNWRYMPNDTYTIMHHLYNKGPMYVGVQMYKNFHHYSSGVFDNPKDKTGGHAILLVGYGTEKGKDYWIIKNSWGERWGENGYAKIRRGVDLMTIESRTVSYPILDPKEK
| Type | Start | End | Length |
| CDS |
7888 |
7993 |
106 |
| CDS |
8146 |
9056 |
911 |
| intron |
7994 |
8145 |
152 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAK11350 |
novel protein (zgc:66267) [Danio rerio] |
5e-40 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| InterPro |
IPR000169 |
Cysteine peptidase, cysteine active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.0028 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
8.6e-09 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
6e-58 |
| Pfam |
PF13529.1 |
Peptidase_C39 like family |
0.54 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00454 |
| P. vanderplanki |
Pv.00453 |