MidgeBase gene description page [Pn.00027]
Outline
| Gene ID | Pn.00027 |
| Type | Protein coding gene |
| Scaffold | PnScaf48 |
| Start | 1839 |
| End | 10733 |
| Direction | - |
Sequence
Transcript: 1467 (bp)
ATGACAATGACGATGAGATCACTTGAGCCCACACCATACTTTGCTGGATATCCCTTCCAAGGTCAAGGACGAGTGAACCAGCTCGGCGGCGTTTTCATTAACGGCAGACCTTTGCCAAATCACATTCGTCTGAAGATTGTGGAGCTTGCGGCAGCTGGCGTGCGGCCGTGCGTAATTAGCAGACAGTTGCGCGTTTCGCACGGTTGCGTGTCGAAAATTCTCAATCGCTACCAGGAGACGGGATCGATTCGGCCAGGCGTCATTGGCGGGAGCAAGCCGCGCGTCGCAACGCCCGAAATCGAGACTCGCATCGAGGAGATGAAGAAGGACAATCCGGGAATGTTTTCGTGGGAAATTCGCGAGCAACTGATCAAAGAAGGAGTTTGCGACAAGCAATCGGCGCCGTCGGTCAGCAGCATTAGTCGCTTGCTGAGGCAGAAGAACGTCGGCGACGGCGAGACTGAAATTCCAAATAACTACTCAATAAACGGCATTCTCGGGCAGTCGGACGAGAGCGACACCGAGTCGGAGCCGGGCATTCAGCTGAAGCGCAAGCAAAGACGCTCGCGCACGACCTTCAACGGCGAGCAGCTTGAGGCTCTGGAGCGAGCCTTCGCGCGAACCCAATATCCCGACGTGTACACTCGCGAGGACCTCGCGCACCACACAAACCTCACCGAGGCGCGCGTTCAGGTCTGGTTCTCGAACCGGCGCGCACGTCTCCGCAAGCAGCTCAACTCGCAGCAAGTGCCGACCTTCAACTCGAACTTGTCGTCGTTCAGCTCGCAGTACGAGGCGCCACTCCAAATGTCGTCCGCTCAAACCTCGTTTGCACCGTCGATGCAGTCGTGGAGCGCACAACCCTACCCTGCACAGCAATCCTCGGCATCGCAATCGACGTCGGCATTCAATCATCTCGCTGCGACGACGACGGCAATGATCACCAGTTCAGCAGCCCTTTCTCCCGCCTCATTAACTTCCAGCCCCGTACACACATCGACGCTGCCGCAAACCACCTCCGCGTCATCAATCTCGAGCAATAACAACAACAACAACAATAACATGAATATGAGCTACAGCAATTATTCATCGTCGCTCTCCGAGCATCAAAACAACTCGACGCCACCGATTCCGACTCACAACCACTTGAGCGCATCGCCGCCCACACCGCCGTCCGTGAGCGCTTCTTCTGCCGCTGCCGCCGCCGCCGCCTATCCGTTCCACTCCTATGGCGGCGCTGTTGCGTCGTCCTTTGATCAAACGTCGCAGTGGCGCGCAGCGAGCATGTCAATGCAGAGCAAGCCGACAATGCCTATGTCCAATGGATTCGAGTCATGGGATGCTTACAGTTCCTTTTTTGCAAGCAACATGAACCACTACCAACCGACAACAACAAGTGGTCACTCGCTTTCACCATCGAGCGGCGATGTAAAGACTTACCACGGCTTAGAAATTAATCGTGTTCAC
Protein: 489 (aa)
MTMTMRSLEPTPYFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVELAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEIETRIEEMKKDNPGMFSWEIREQLIKEGVCDKQSAPSVSSISRLLRQKNVGDGETEIPNNYSINGILGQSDESDTESEPGIQLKRKQRRSRTTFNGEQLEALERAFARTQYPDVYTREDLAHHTNLTEARVQVWFSNRRARLRKQLNSQQVPTFNSNLSSFSSQYEAPLQMSSAQTSFAPSMQSWSAQPYPAQQSSASQSTSAFNHLAATTTAMITSSAALSPASLTSSPVHTSTLPQTTSASSISSNNNNNNNNMNMSYSNYSSSLSEHQNNSTPPIPTHNHLSASPPTPPSVSASSAAAAAAAYPFHSYGGAVASSFDQTSQWRAASMSMQSKPTMPMSNGFESWDAYSSFFASNMNHYQPTTTSGHSLSPSSGDVKTYHGLEINRVH
| Type | Start | End | Length |
| CDS |
1842 |
1959 |
118 |
| CDS |
2446 |
3733 |
1288 |
| CDS |
10673 |
10733 |
61 |
| intron |
1960 |
2445 |
486 |
| intron |
3734 |
10672 |
6939 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA09269 |
gooseberry [Tribolium castaneum] |
1e-122 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR001523 |
Paired domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF05920.6 |
Homeobox KN domain |
3.7e-05 |
| Pfam |
PF13565.1 |
Homeodomain-like domain |
3.8e-05 |
| Pfam |
PF13384.1 |
Homeodomain-like domain |
4.1e-07 |
| Pfam |
PF00292.13 |
'Paired box' domain |
1.2e-72 |
| Pfam |
PF13551.1 |
Winged helix-turn helix |
3.3e-07 |
| Pfam |
PF12802.2 |
MarR family |
0.099 |
| Pfam |
PF13518.1 |
Helix-turn-helix domain |
0.0029 |
| Pfam |
PF00046.24 |
Homeobox domain |
2.3e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_07081 |
| H. melpomene |
HMEL015048-PA |
| N. vitripennis |
NV18360-PA |
| D. melanogaster |
FBgn0001148 |
| P. humanus |
PHUM134580-PA |
| S. invicta |
SI2.2.0_02934 |
| P. vanderplanki |
Pv.10124 |
| H. sapiens |
ENSP00000364524 |
| B. mori |
BGIBMGA009025-TA |
| P. vanderplanki |
Pv.12031 |
| C. quinquefasciatus |
CPIJ006496 |
| T. castaneum |
TC015804 |
| H. sapiens |
ENSP00000342092 |
| D. plexippus |
DPOGS216048PA |
| P. humanus |
PHUM375940-PA |
| H. sapiens |
ENSP00000375921 |
| A. gambiae |
AGAP010358 |
| M. musculus |
ENSMUSG00000028736 |
| H. sapiens |
ENSP00000386750 |
| M. musculus |
ENSMUSG00000004872 |
| T. castaneum |
TC006788 |
| H. sapiens |
ENSP00000383502 |
| H. sapiens |
ENSP00000338767 |
| A. mellifera |
GB15632-PA |
| H. sapiens |
ENSP00000375922 |
| D. melanogaster |
FBgn0003145 |
| H. sapiens |
ENSP00000403389 |
| A. mellifera |
GB15469-PA |
| H. sapiens |
ENSP00000343052 |